PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA013672-PA
Common NameOsI_13762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 505aa    MW: 54507.1 Da    PI: 8.3691
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA013672-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.21.3e-17340386455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka+iL +A+eY+ksLq
  BGIOSGA013672-PA 340 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASILDEAIEYLKSLQ 386
                       6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.77E-18331390No hitNo description
SuperFamilySSF474592.88E-21334401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.635336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-15340386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-22340395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18342391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MPNPSSLLAS PSPPHRNSSS SSSISIISTP ATIQPDAAHG PCSLLTTSKY ALRDTRGSKS  60
SYTRLCCCCT AAPKAEQEEE TLQQELLLFG LVQVVNFLGG HKNRGMDGNA RSAANQTKQI  120
VTDNELVELL WHNGGVVAQP QAAQARVVSS SGRGQSASVL TGDDTETAAW FPDTLDDALE  180
KDLYTQLWRS VTGDAFPAAA AAGPSSHHAP PPDLPPPAAR PPMRSGIGSS WTGDICSAFC  240
GSNHIPETAA QRCRDAGAAL PPERPRRSST HDGAGTSSSG GSGSNFGASG LPSESASAHK  300
RKGREDSDSR SEDAECEATE ETKSSSRRYG SKRRTRAAEV HNLSERRRRD RINEKMRALQ  360
ELIPHCNKTD KASILDEAIE YLKSLQMQVQ IMWMTTGMAP MMFPGAHQFM PPMAVGMNSA  420
CMPAAQGLSH MSRLPYMNHS MPNHIPLNSS PAMNPMNVAN QMQNIQLREA SNPFLHPDGW  480
QTVPPQRKRR RRRMMQPGAL AEPGQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331348KRRTRAAEVHNLSERRRR
2344349ERRRRD
3485491QRKRRRR
4486490RKRRR
5486492RKRRRRR
6487492KRRRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.51780.0flower| leaf| panicle| seed| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1056370.0AK105637.1 Oryza sativa Japonica Group cDNA clone:001-200-E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633322.10.0PREDICTED: transcription factor PIF5 isoform X3
TrEMBLB8AKW20.0B8AKW2_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA013672-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31743482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-31phytochrome interacting factor 3